Changes in metabolic characteristics of soil microbial communities during intercropping of oats and vetch
Vanya Popova, Ivelina Neykova

, Stefan Shilev

Abstract: The excessive use of chemicals and monoculture cultivation has led to damage to soil and plant health, which is also a consequence of the reduced diversity of the soil microbiome. Various approaches related to intercropping, reduced tillage practices and organic amendments are applied to restore biodiversity in agroecosystems. This study aims to illuminate the changes in soil microbiome metabolic potential during the intercropping of oats and vetch. Vetch and oats seeds were sown at 3:1 proportion in spring. Soil samples were taken four times: before sowing; from the rhizosphere during the tillering and ripening phases; and 2 months after incorporation of the plants at a depth of 20 cm into the soil by ploughing, as green manure. We found the highest microbial activity as soil basal and induced respiration, as well as the activity of soil dehydrogenase enzyme in the ripening stage. In contrast, the highest level of metabolization of carbon compounds of the Ecoplates was found in the tillering one, followed by ripening, green manure phase, and before sowing. The strongest uptake by microbial communities was observed for amino acids, polymers, carboxylic acids and carbohydrates. Differences in community-level physiological profiles (CLPP) of the rhizosphere microbiome were discovered using principal component analysis. P.C. 1 of 62.69% showed the highest correlation of L-arginine and α-cyclodextrin before sowing, β-methyl-D-glucoside, and D-glucosaminic acid during tillering, α-D-lactose, and L-asparagine during tillering and ripening, and of L-threonine, glycogen, and D-glucosaminic acid in case of green manure. PC2 contributed 18.47%, and was primarily associated with amino acids and carbohydrates. Вecause increased microbial metabolic capacity has a positive effect on soil processes, this study should be considered very useful in evaluating the development of soil communities during the stages of oats and vetch intercropping.
Keywords: CLPP; intercropping; microbial activity; oats; vetch
Citation: Popova, V., Neykova, I. & Shilev, S. (2026). Changes in metabolic characteristics of soil microbial communities during intercropping of oats and vetch. Bulg. J. Agric. Sci., 32(1), 173–180
| References: (click to open/close) | Alef, K. (1995а). Dehydrogenase activity. In: Methods in Applied Soil Microbiology and Biochemistry (Alef, K., Nannipieri, P., eds.). Academic Press, Cambridge, MA, USA, 228 - 231. Alef, K. (1995b). Soil respiration. In: Methods in Applied Soil Microbiology and Biochemistry (Alef, K., Nannipieri, P., eds.). Academic Press Cambridge, MA, USA, 214 - 219. Anderson, J. P. E. & Domsch, K. H. (1989). Ratios of microbial biomass carbon to total organic carbon in arable soils. Soil Biology Biochemistry, 21, 471 - 479. Bulluck, L. R., Brosius, M., Evanylo, G. K. & Ristaino, J. B. (2002). Organic and synthetic fertility amendments influence soil microbial, physical and chemical properties on organic and conventional farms. Appl. Soil Ecol., 19, 147 - 160. Chinthalapudi, D. P. M., Pokhrel, S., Kingery,W. L., Shankle, M. W. & Ganapathi Shanmugam, S. (2023). Exploring the synergistic impacts of cover crops and fertilization on soil microbial metabolic diversity in dryland soybean production systems using biolog ecoplates. Applied Bioscience, 2, 328 - 346. https://doi.org/10.3390/applbiosci2030022. Dubey, A., Malla, M. A., Khan, F., Chowdhary, K., Yadav, S., Kumar, A., Sharma, S., Khare, P. K. & Khan, M. L. (2019). Soil microbiome: a key player for conservation of soil health under changing climate. Biodiversity Conservation, 28, 2405 - 2429. Egnér, H., Riehm, H. & Domingo, W. (1960). Investigations on chemical soil analysis as a basis for assessing the nutrient status of soils: II. Chemical extraction methods for phosphorus and potassium determination. Kungliga Lant-brukshögskol. Annal., 26, 199 - 215 (De). Epelde, L., Becerril, J. M., Hernández-Allica, J., Barrutia, O. & Garbisu, C. (2008). Functional diversity as indicator of the recovery of soil health derived from Thlaspi caerulescens growth and metal phytoextraction. Applied Soil Ecology, 39, 299 - 310. Fitouri, S. D., Boudabbous, K., Ben Romdhane, A., Hammami, S. T., Dhib, W., Ben-Jeddi, F., Karmous, C. & BenYoussef, S. (2022). Agronomic potential of biofertilizers on growth, yields and nutritional quality of a vetch-oat-triticale intercropping system. Agrociencia. Available at: https://doi.org/10.47163/agrociencia.v56i7.2776. Garland, J. L. & Mills, A. L. (1991). Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Applied Environmental Microbiology, 57, 2351 - 2359. Gaublomme, E., De Vos, B. & Cools, N. (2006). An indicator for Microbial Biodiversity in Forest Soils. INBO. R.2006.40 Instituut voor Natuur- en Bosonderzoek, Brussel. Gomez, E., Ferreras, L. & Toresani, S. (2006). Soil bacterial functional diversity as influenced by organic amendment application. Bioresource technology, 97, 1484 - 1489. Hedblom, M. L. & Adler, J. (1983). Chemotactic response of escherichia coli to chemically synthesized amino acids. J. Bacteriol, 155, 1463 - 1466. Halvorson, H. (1972). Utilization of single L-amino acids as sole source of carbon and nitrogen by bacteria. Can. J. Microbiol, 18, - 1674 – 1650. https://doi.org/10.1139/m72-255. Insam, H. & Goberna, M. (2008). Use of Biology for the community level physiological profiling (CLPP) of environmental samples. Mol. Microb. Ecol. Manag., 452, 853 - 860. Irving, D., Bakhshandeh, S., Tran, T. K. A. & McBratney, A. B. (2024). A cost-effective method for quantifying soil respiration. Soil Security, 16, 100162. https://doi.org/10.1016/j.soisec.2024.100162. Khalifa, T. H., Mariey, S. A., Ghareeb, Z. E., Khatab, I. A. & Alyamani, A. (2022). Effect of organic amendments and nano-zinc foliar application on alleviation of water stress in some soil properties and water productivity of barley yield. Agronomy, 12, 585. Li, Ch., Stomph, T.-J., Makowski, D. & van der Werf, W. (2023). The productive performance of intercropping. PNAS, 120(2), e2201886120. https://doi.org/10.1073/pnas.220188612. Lochab, B., Shuklaa, S. & Varmab, I. K. (2014). Naturally occurring phenolic sources: Monomers and polymers. RSC Adv., 4, 21712 - 21752. Nowak, A., Wasilkowski, D. & Mrozik, A. (2022). Implications of Bacterial Adaptation to Phenol Degradation under Suboptimal Culture Conditions Involving Stenotrophomonas maltophilia KB2 and Pseudomonas moorei KB4. Water, 14, 2845. https://doi.org/10.3390/w14182845. Ordal, G. W. & Gibson, K. J. (1977). Chemotaxis toward amino acids by Bacillus subtilis. J. Bacteriol., 129151 - 129155. Poonia, T., Choudhary, M., Kakraliya, M., Dixit, B. & Jat, H. S. (2024). The influence of soil types and agricultural management practices on soil chemical properties and microbial dynamics. Front. Sustain. Food Syst., 8, 1412198. doi:10.3389/fsufs.2024.1412198. Qu, J., Li, L., Bai, J., Chen, G., Zhang, Y. & Chang, Q. (2022). Influence of different proportion intercropping on oat and common vetch yields and nutritional composition at different growth stages. Agronomy, 12, 1908. https://doi.org/10.3390/agronomy12081908. Rhoades, J. D. (1996). Salinity, electrical conductivity, and total dissolved solids. In: Methods of Soil Analysis. (Sparks, D.L., ed.), Part 3. SSSA Book Ser. 5. SSSA, Madison, WI, USA, 417 - 435. Shilev, S., Azaizeh, H., Vassilev, N., Georgiev, D. & Babrikova, I. (2019). Interactions in soil-microbe-plant system: adaptation to stressed agriculture. In: Microbial Interventions in Agriculture and Environment (Singh, D.P., Gupta, V.K., Prabha, R., eds.), 1, 131 - 171. Research Trends, Priorities and Prospects. Springer Singapore. DOI: https://doi.org/10.1007/978-981-13-8391-5_6, ISBN: 9789811383915. Shilev, S., Mitova, I., Kuncheva, V., Dinev & Kabaivanova, L. (2022). Distribution of soil microorganisms in field under potatoes due to fertilizer and organics. Indian journal of agricultural research, 56(4), 401 – 407. https://doi.org/10.18805/IJARe.A-669. Shilev, S., Mitkov, A., Popova, V., Neykova, I., Minev, N., Szulc,W., Yordanov, Y. & Yanev, M. (2024). Fertilization type differentially affects barley grain yield and nutrient content, soil and microbial properties. Microorganisms, 12, 1447. https://doi.org/10.3390/microorganisms12071447. Shrestha, K., Stevens, S., Shrestha, P., Adetutu, E. M., Walsh, K. L., Ball, A. S. & Midmore, D. J. (2015). Characterisation of the soil microbial community of cultivated and uncultivated vertisol in Australia under several management regimes. Agriculture, Ecosystems and Environment, 199, 418 - 427. https://doi.org/10.1016/j.agee.2014.10.002. Thalmann, A. (1968). Methodology for determining dehydrogenase activity in soil using thriphenyltetrazolium chloride (TTC). Landirtsch forsch, 21, 249 - 258 (De). Thavamani, P., Megharaj, M. & Naidu, R. (2012). Bioremediation of high molecular weight polyaromatic hydrocarbons co-contaminated with metals in liquid and soil slurries by metal tolerant PAHs degrading bacterial consortium. Biodegradation, 23, 823 - 835. https://doi.org/10.1007/s10532-012-9572-7. Thomas, G. W. (1996). Soil pH and soil acidity. In: Methods of Soil Analysis (Sparks, D.L., ed.) Part 3. SSSA Book Ser. 5. SSSA, Madison, WI, 475 - 490. Trevors, J. T. (1984). Effect of substrate concentration, inorganic nitrogen, O2 concentration, temperature and pH on dehydrogenase activity in soil. Plant Soil, 77, 285. Tsiafouli, M. A., Thébault, E., Sgardelis, S. P., et al. (2015). Intensive agriculture reduces soil biodiversity across Europe. Glob. Chang. Biol. 21, 973 - 985. Usmani, Z., Kumar, V., Gupta, P., Gupta, G., Rani, R. & Chandra, A. (2019). Enhanced soil fertility, plant growth promotion and microbial enzymatic activities of vermicomposted fly ash. Scientific reports, 9, 10455. https://doi.org/10.1038/s41598-019-46821-5. Zhang, B.-H., Hong, J.-P., Zhang, Q., Jin, D.-S. & Gao, C.-H. (2020). Contrast in soil microbial metabolic functional diversity to fertilization and crop rotation under rhizosphere and non-rhizosphere in the coal gangue landfill reclamation area of Loess Hills. PLoS ONE, 15, e0229341. |
|
| Date published: 2026-02-25
Download full text