Genetic diversity assessment of selected rose genotypes using CEAP markers
Mariya Zhelyazkova
, Veselina Badzhelova
, Svetlana Georgieva, Lyudmila Lozanova
, Peter Hristov
, Stela Lazarova
Abstract: Bulgaria has a long-standing tradition of cultivating medicinal and aromatic plants, especially oil-bearing roses. Research on the genetic diversity of local rose populations using DNA markers is crucial for conservation and breeding applications. In this study, we used cis-еlement amplified polymorphism (CEAP) markers to assess the genetic diversity and relationships among eight Rosa genotypes, including two varieties of Rosa damascena Mill., Rosa sp. and five other species (R. alba L., R. canina L., R. gallica L., R. centifolia L., and R. moschata Herrm.), mostly sourced from the collection of Institute for Roses and Aromatic Plants. Sixteen CEAP primers targeting seven cis-elements produced 201 bands, of which 78% were polymorphic, indicating a significant genetic variation. Polymorphism Information Content (PIC) values ranged from 0.12 to 0.88, with an average of 0.56. Genetic diversity indicators, such as Shannon’s Information Index (I = 0.6) and expected heterozygosity (He = 0.4), confirmed a high level of variability. CEAP markers also identified unique loci for specific genotypes. Rosa damascena, R. gallica, R. ‘raduga’ and R. canina showed greater genetic similarity, while R. moschata, R. centifolia, and R. alba were more distantly related.
Our study provides the first evidence of the utility and effectiveness of CEAP markers in analysing genetic diversity across different Rosa genotypes, providing valuable data for future breeding programs. This research highlights the importance of genetic resource conservation and extend our knowledge on the genetic structure of oil-bearing Rosa species in Bulgaria.
Keywords: CEAP markers; genetic diversity; oil-bearing roses; Rosa damascena; Rosa species
Citation: Zhelyazkova, M., Badzhelova, V., Georgieva, S., Lozanova, L., Hristov, P. & Lazarova, S. (2024). Genetic diversity assessment of selected rose genotypes using CEAP markers. Bulg. J. Agric. Sci., 30 (Supplement 1), 144–151
References: (click to open/close) | Ahmed, S. M. (2019). Phylogenetic analysis of Rosa damascena L. from Taif using DNA barcoding approach. Pakistan Journal of Botany, 51(1), 157-164. Anderson, M. J., Gorley, R. N. & Clarke, K. R. (2008). PERMANOVA+ for PRIMER: Guide to Software and Statistical Methods PRIMER-E, Plymouth, UK. Badzhelova, V. (2017). Study on in vitro propagation of oil-bearing rose (Rosa damascena Mill.). Agricultural Science and Technology, 9(3), 194-197 Badzhelova, V., Bozhanova, V. & Chokov, G. (2018). In vitro propagation of oil-bearing rose (Rosa alba). Agricultural Science and Technology, 10(2), 90-95. Chen, M. Y., He, X. H., Zhang, Y. L., Lu, T. T., Yang, J. H., Huang, X., Zhu, J., Yu, H. & Luo, C. (2022b). Genetic diversity and relationship analyses of mango (Mangifera indica L.) germplasm resources with ISSR, SRAP, CBDP and CEAP markers. Scientia Horticulturae, 301, 111146. Chen, M., He, X., Huang, X., Lu, T., Zhang, Y., Zhu, J., Yu, H. & Luo, C. (2022a). Cis-element amplified polymorphism (CEAP), a novel promoter-and gene-targeted molecular marker of plants. Physiology and Molecular Biology of Plants, 28(7), 1407-1419. Debener, T., Dohm, A., Mattiesch, L. & Forkmann, G. (2003). Use of diploid self-incompatible rose genotypes as a tool for gene flow analyses in roses. Plant Breeding, 122(3), 285-287. Gogoi, B., Wann, S. B. & Saikia, S. P. (2020). Comparative assessment of ISSR, RAPD, and SCoT markers for genetic diversity in Clerodendrum species of North East India. Molecular Biology Reports, 47, 7365–7377. Godwin, I. D., Aitken, E. A. & Smith, L. W. (1997). Application of inter simple sequence repeat (ISSR) markers to plant genetics. Electrophoresis, 18(9), 1524-1528. Hammer, Ø. & Harper, D. A. (2001). Past: paleontological statistics software package for educaton and data anlysis. Palaeontologia electronica, 4(1), 1. Iwata, H., Kato, T. & Ohno, S. (2000). Triparental origin of Damask roses. Gene, 259(1-2), 53-59. Jamali, M., Ghanbari, A., Estaji, A., Torabi Giglou, M. & Saidi, M. (2019). Genetic diversity of dog rose (Rosa canina L.) using ISSR markers. Iranian Journal of Genetics and Plant Breeding, 8(2), 1-8. Klimenko, Z. E. & Zubtsova (1986). Roses - a catalog guide. Published by Nauchno Dumka (Ru). Meszaros, K., Karsai, I., Kuti, C., Banyai, J., Lang, L. & Bedo, Z. (2007). Efficiency of different marker systems for genotype fingerprinting and for genetic diversity studies in barley (Hordeum vulgare L.). South African Journal of Botany, 73(1), 43-48. Mirzaei, L., Rahmani, F. & Beigmohamadi, M. (2015). Assessment of genetic variation among Rosa species using ISSR genetic markers. Journal of Biodiversity and Environmental Sciences, 3, 254-260. Nagaraju, J., Damodar, R. K., Nagaraja, G. M. & Sethuraman, B. N. (2001). Comparison of multilocus RFLPs and PCR-based marker systems for genetic analysis of the silkworm, Bombyx mori. Heredity, 86, 588-597. Nazarenko, L. G. (1983) Raduga - New Sort Essential Oil Rose; Scientific Works of VNIEMK: Simpheropol, Ukraine, 15, 49-54. Nedkov, N., Kunev, K., Kovacheva, N., Stanev, St., Dzhurmanski, A., Seikova, K. & Labev, Hr. (2005). Handbook of essential oil and medicinal crops. Helicon, Kazanlak (Bg). Peakall, R. & Smouse, P. E. (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Resources, 6, 288-295. Prevost, A. & Wilkinson, M. J. (1999). A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theoretical and Applied Genetics, 98, 107-112. Roldan-Ruiz, I., Dendauw, J., Vanbockstaele, E., Depicker, A. & De Loose, M. (2000). AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp.). Molecular Breeding, 6, 125-134. 'Rosa' (2024). Trees and Shrubs Online. Retrieved from https://www.treesandshrubsonline.org/articles/rosa/. Rusanov, K., Kovacheva, N., Atanassov, A. & Atanassov, I. (2005). Microsatellite analysis of oil-bearing roses which do not belong to the species Rosa damascena Mill. Bulgarian Journal of Agricultural Science, 11(1), 1. Rusanov, K., Kovacheva, N., Rusanova, M. & Atanassov, I. (2013). Flower phenotype variation, essential oil variation and genetic diversity among Rosa alba L. accessions used for rose oil production in Bulgaria. Scientia Horticulturae, 161, 76-80. Rusanov, K., Rusanova, M., Kovacheva, N. & Atanassov, I. (2022). DNA marker tightly linked to the double flower locus in Rosa X damascena Mill. F. Trigintipetala suitable for marker assisted breeding. In Proceedings of the Bulgarian Academy of Sciences, 75(2), 303-312. Smulders, M. J. M., Arens, P., Koning-Boucoiran, C. F. S., Gitonga, V. W., Krens, F. A., Atanassov, A., ... & Nybom, H. (2011). Rosa. In: Wild crop relatives: genomic and breeding resources: Plantation and ornamental crops, 243-275. Tutin, T. G., Heywood, V. H., Burges, N. A., Moore, D. M., Valentine, D. H., Walters, S. M. & Webb, D. A. (1968). Flora Europaea, Rosaceae to Umbelliferae. Cambridge University Press, 2, 25-32. Van de Pol, P. A. (2003). History of the Perfume Industry. In: Encyclopedia of Rose Science, Elsevier, 410-414. Varshney, R. K., Chabane, K., Hendre, P. S., Aggarwal, R. K. & Graner, A. (2007). Comparative assessment of EST-SSR, EST, SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science, 173, 638-649. Wang, Z., Wu, X., Pi, Z., Wu, Z. & Li, S. (2024). Genetic diversity analysis of red beet germplasm resources using CEAP molecular markers. Sugar Tech, 1-10. Widrlechner, M. P. (1981). History and utilization of Rosa damascena. Economic Botany, 35, 42-58. Wissemann, V. (2007). Plant evolution by means of hybridization. Systematics and Biodiversity, 5(3), 243–253. https://doi.org/10.1017/S1477200007002381. Wissemann, V. (2017). Conventional taxonomy (wild roses). Systematics and Biodiversity, 5 (3), 243-253. doi:10.1017/S1477200007002381 Wulf, E. & Maleeva, O. (1969). World resources of useful plants: a handbook. Nauka, 192 (Ru). |
|
| Date published: 2024-12-13
Download full text